recipe bioconductor-tanggle

Visualization of Phylogenetic Networks

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/tanggle.html

License:

Artistic-2.0

Recipe:

/bioconductor-tanggle/meta.yaml

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

package bioconductor-tanggle

(downloads) docker_bioconductor-tanggle

Versions:

1.4.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tanggle

and update with:

conda update bioconductor-tanggle

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tanggle:<tag>

(see bioconductor-tanggle/tags for valid values for <tag>)

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