recipe bioconductor-targetscore

TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information

Homepage

https://bioconductor.org/packages/3.11/bioc/html/TargetScore.html

License

GPL-2

Recipe

/bioconductor-targetscore/meta.yaml

Links

biotools: targetscore, doi: 10.1093/bioinformatics/btt599

Infer the posterior distributions of microRNA targets by probabilistically modelling the likelihood microRNA-overexpression fold-changes and sequence-based scores. Variaitonal Bayesian Gaussian mixture model (VB-GMM) is applied to log fold-changes and sequence scores to obtain the posteriors of latent variable being the miRNA targets. The final targetScore is computed as the sigmoid-transformed fold-change weighted by the averaged posteriors of target components over all of the features.

package bioconductor-targetscore

(downloads) docker_bioconductor-targetscore

Versions

1.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-01.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-targetscore

and update with:

conda update bioconductor-targetscore

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-targetscore:<tag>

(see bioconductor-targetscore/tags for valid values for <tag>)