recipe bioconductor-teqc

Quality control for target capture experiments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/TEQC.html

License

GPL (>= 2)

Recipe

/bioconductor-teqc/meta.yaml

Links

biotools: teqc, doi: 10.1093/bioinformatics/btr122

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

package bioconductor-teqc

Versions

4.10.0-0, 4.8.0-0, 4.6.0-1, 4.4.0-0, 4.2.0-0, 3.18.0-0, 3.16.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• r-base >=4.0,<4.1.0a0

• r-hwriter

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-teqc

and update with:

conda update bioconductor-teqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-teqc:<tag>

(see bioconductor-teqc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-teqc/README.html)