- recipe bioconductor-teqc
Quality control for target capture experiments
- Homepage
- License
GPL (>= 2)
- Recipe
- Links
biotools: teqc, doi: 10.1093/bioinformatics/btr122
Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.
- package bioconductor-teqc¶
-
- Versions
4.16.0-0
,4.14.0-0
,4.12.0-1
,4.12.0-0
,4.10.0-0
,4.8.0-0
,4.6.0-1
,4.4.0-0
,4.2.0-0
,4.16.0-0
,4.14.0-0
,4.12.0-1
,4.12.0-0
,4.10.0-0
,4.8.0-0
,4.6.0-1
,4.4.0-0
,4.2.0-0
,3.18.0-0
,3.16.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-teqc
and update with:
conda update bioconductor-teqc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-teqc:<tag>
(see bioconductor-teqc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-teqc/README.html)