bioconductor-teqc

downloads

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Home http://bioconductor.org/packages/3.6/bioc/html/TEQC.html
Versions 3.16.0, 3.18.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-teqc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-teqc

and update with:

conda update bioconductor-teqc

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-teqc.