bioconductor-tfbstools

downloads

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

Home http://bioconductor.org/packages/3.6/bioc/html/TFBSTools.html
Versions 1.12.2, 1.14.2, 1.15.7, 1.16.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tfbstools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tfbstools

and update with:

conda update bioconductor-tfbstools

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-tfbstools.