recipe bioconductor-tfea.chip

Analyze Transcription Factor Enrichment

Homepage

https://bioconductor.org/packages/3.10/bioc/html/TFEA.ChIP.html

License

Artistic-2.0

Recipe

/bioconductor-tfea.chip/meta.yaml

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

package bioconductor-tfea.chip

Versions

1.6.0-0, 1.4.2-0, 1.2.1-0

Depends

• bioconductor-biomart >=2.42.0,<2.43.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-org.hs.eg.db >=3.10.0,<3.11.0

• r-base >=3.6,<3.7.0a0

• r-dplyr

• r-r.utils

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tfea.chip

and update with:

conda update bioconductor-tfea.chip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tfea.chip:<tag>

(see bioconductor-tfea.chip/tags for valid values for <tag>)

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tfea.chip/README.html)