Package Recipe 'bioconductor-tfea.chip'

recipe bioconductor-tfea.chip¶

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/TFEA.ChIP.html
License: Artistic-2.0
Recipe: /bioconductor-tfea.chip/meta.yaml

package bioconductor-tfea.chip¶

Versions: 1.2.1-0
Depends bioconductor-biomart: >=2.38.0,<2.39.0
Depends bioconductor-genomicfeatures: >=1.34.0,<1.35.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-iranges: >=2.16.0,<2.17.0
Depends bioconductor-org.hs.eg.db: >=3.7.0,<3.8.0
Depends bioconductor-txdb.hsapiens.ucsc.hg19.knowngene: >=3.2.0,<3.3.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-dplyr
Depends r-r.utils
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tfea.chip

and update with:

conda update bioconductor-tfea.chip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tfea.chip:<tag>

(see bioconductor-tfea.chip/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tfea.chip/README.html)