recipe bioconductor-tfea.chip

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/TFEA.ChIP.html

License

Artistic-2.0

Recipe

/bioconductor-tfea.chip/meta.yaml

package bioconductor-tfea.chip

(downloads) docker_bioconductor-tfea.chip

Versions

1.2.1-0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

>=3.2.0,<3.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dplyr

Depends r-r.utils

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tfea.chip

and update with:

conda update bioconductor-tfea.chip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tfea.chip:<tag>

(see bioconductor-tfea.chip/tags for valid values for <tag>)