recipe bioconductor-tfea.chip

Analyze Transcription Factor Enrichment

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/TFEA.ChIP.html

License:

Artistic-2.0

Recipe:

/bioconductor-tfea.chip/meta.yaml

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

package bioconductor-tfea.chip

Versions:

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.2-0,  1.2.1-0

Depends:

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-org.hs.eg.db >=3.14.0,<3.15.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-r.utils

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tfea.chip

and update with:

conda update bioconductor-tfea.chip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tfea.chip:<tag>

(see bioconductor-tfea.chip/tags for valid values for <tag>)

Download stats

Link to this page

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