recipe bioconductor-tfea.chip

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/TFEA.ChIP.html

License

Artistic-2.0

Recipe

/bioconductor-tfea.chip/meta.yaml

package bioconductor-tfea.chip

Versions

1.2.1-0

Depends

• bioconductor-biomart >=2.38.0,<2.39.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-org.hs.eg.db >=3.7.0,<3.8.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-dplyr

• r-r.utils

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tfea.chip

and update with:

conda update bioconductor-tfea.chip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tfea.chip:<tag>

(see bioconductor-tfea.chip/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tfea.chip/README.html)