recipe bioconductor-tfea.chip

Analyze Transcription Factor Enrichment

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TFEA.ChIP.html

License:

Artistic-2.0

Recipe:

/bioconductor-tfea.chip/meta.yaml

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

package bioconductor-tfea.chip

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.2-0,  1.2.1-0

Depends:

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-r.utils

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tfea.chip

and update with:

conda update bioconductor-tfea.chip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tfea.chip:<tag>

(see bioconductor-tfea.chip/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tfea.chip/README.html)