recipe bioconductor-timecoursedata

A data package for timecourse RNA-seq and microarray gene expression data sets

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/timecoursedata.html

License:

BSD 3-clause License + file LICENSE

Recipe:

/bioconductor-timecoursedata/meta.yaml

This data package contains timecourse gene expression data sets. The first dataset, from Shoemaker et al, consists of microarray samples from lung tissue of mice exposed to different influenzy strains from 14 timepoints. The two other datasets are leaf and root samples from sorghum crops exposed to pre- and post-flowering drought stress and a control condition, sampled across the plants lifetime.

package bioconductor-timecoursedata

Versions:

1.8.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221106

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-timecoursedata

and update with:

conda update bioconductor-timecoursedata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-timecoursedata:<tag>

(see bioconductor-timecoursedata/tags for valid values for <tag>)

Download stats

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