recipe bioconductor-timirgen

Time sensitive microRNA-mRNA integration, analysis and network generation tool

Homepage

https://bioconductor.org/packages/3.13/bioc/html/TimiRGeN.html

License

GPL-3

Recipe

/bioconductor-timirgen/meta.yaml

TimiRGeN (Time Incorporated miR-mRNA Generation of Networks) is a novel R package which functionally analyses and integrates time course miRNA-mRNA differential expression data. This tool can generate small networks within R or export results into cytoscape or pathvisio for more detailed network construction and hypothesis generation. This tool is created for researchers that wish to dive deep into time series multi-omic datasets. TimiRGeN goes further than many other tools in terms of data reduction. Here, potentially hundreds of thousands of potential miRNA-mRNA interactions can be whittled down into a handful of high confidence miRNA-mRNA interactions effecting a signalling pathway, across a time course.

package bioconductor-timirgen

(downloads) docker_bioconductor-timirgen

Versions

1.2.0-01.0.3-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-timirgen

and update with:

conda update bioconductor-timirgen

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-timirgen:<tag>

(see bioconductor-timirgen/tags for valid values for <tag>)

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