recipe bioconductor-tin

Transcriptome instability analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TIN.html

License:

Artistic-2.0

Recipe:

/bioconductor-tin/meta.yaml

Links:

biotools: tin, doi: 10.4137/CIN.S31363

The TIN package implements a set of tools for transcriptome instability analysis based on exon expression profiles. Deviating exon usage is studied in the context of splicing factors to analyse to what degree transcriptome instability is correlated to splicing factor expression. In the transcriptome instability correlation analysis, the data is compared to both random permutations of alternative splicing scores and expression of random gene sets.

package bioconductor-tin

Versions:

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0, 

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-impute >=1.72.0,<1.73.0

• r-aroma.affymetrix

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-squash

• r-stringr

• r-wgcna

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tin

and update with:

conda update bioconductor-tin

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tin:<tag>

(see bioconductor-tin/tags for valid values for <tag>)

Download stats

Link to this page

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