recipe bioconductor-titancna

Hidden Markov model to segment and predict regions of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH), and estimate cellular prevalence of clonal clusters in tumour whole genome sequencing data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/TitanCNA.html

License

GPL-3

Recipe

/bioconductor-titancna/meta.yaml

Links

biotools: titancna

package bioconductor-titancna

(downloads) docker_bioconductor-titancna

Versions

1.20.1-0, 1.20.0-0, 1.19.1-4, 1.19.1-3, 1.19.1-2, 1.19.1-1, 1.19.1-0, 1.18.0-0, 1.17.2-0, 1.16.0-1, 1.16.0-0, 1.15.0-0, 1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-titancna

and update with:

conda update bioconductor-titancna

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-titancna:<tag>

(see bioconductor-titancna/tags for valid values for <tag>)