- recipe bioconductor-titancna
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/TitanCNA.html
- License:
GPL-3
- Recipe:
- Links:
biotools: titancna
Hidden Markov model to segment and predict regions of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH), and estimate cellular prevalence of clonal clusters in tumour whole genome sequencing data.
- package bioconductor-titancna¶
-
- Versions:
1.36.0-0
,1.32.0-2
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.36.0-0
,1.32.0-2
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.1-0
,1.20.0-0
,1.19.1-4
,1.19.1-3
,1.19.1-2
,1.19.1-1
,1.19.1-0
,1.18.0-0
,1.17.2-0
,1.16.0-1
,1.16.0-0
,1.15.0-0
,1.14.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
r-data.table
>=1.10.4
r-dplyr
>=0.5.0
r-foreach
>=1.4.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-titancna
and update with:
conda update bioconductor-titancna
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-titancna:<tag>
(see bioconductor-titancna/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-titancna/README.html)