bioconductor-titancna

downloads

Hidden Markov model to segment and predict regions of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH), and estimate cellular prevalenece of clonal clusters in tumour whole genome sequencing data.

Home http://bioconductor.org/packages/3.6/bioc/html/TitanCNA.html
Versions 1.14.0, 1.15.0, 1.16.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-titancna

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-titancna

and update with:

conda update bioconductor-titancna

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-titancna.