recipe bioconductor-tmexplorer

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/TMExplorer.html

License:

Artistic-2.0

Recipe:

/bioconductor-tmexplorer/meta.yaml

This package provides a tool to search and download a collection of tumour microenvironment single-cell RNA sequencing datasets and their metadata. TMExplorer aims to act as a single point of entry for users looking to study the tumour microenvironment at the single cell level. Users can quickly search available datasets using the metadata table and then download the ones they are interested in for analysis.

package bioconductor-tmexplorer

Versions:

1.8.0-0,  1.4.0-1,  1.4.0-0,  1.2.1-0,  1.0.1-0,  0.99.6-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-data-packages >=20221106

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• curl

• r-base >=4.2,<4.3.0a0

• r-matrix

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tmexplorer

and update with:

conda update bioconductor-tmexplorer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tmexplorer:<tag>

(see bioconductor-tmexplorer/tags for valid values for <tag>)

Download stats

Link to this page

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