recipe bioconductor-tomoda

Tomo-seq data analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/tomoda.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-tomoda/meta.yaml

This package provides many easy-to-use methods to analyze and visualize tomo-seq data. The tomo-seq technique is based on cryosectioning of tissue and performing RNA-seq on consecutive sections. (Reference: Kruse F, Junker JP, van Oudenaarden A, Bakkers J. Tomo-seq: A method to obtain genome-wide expression data with spatial resolution. Methods Cell Biol. 2016;135:299-307. doi:10.1016/bs.mcb.2016.01.006) The main purpose of the package is to find zones with similar transcriptional profiles and spatially expressed genes in a tomo-seq sample. Several visulization functions are available to create easy-to-modify plots.

package bioconductor-tomoda

(downloads) docker_bioconductor-tomoda

Versions:

1.8.0-01.4.0-01.2.0-01.0.0-11.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tomoda

and update with:

conda update bioconductor-tomoda

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tomoda:<tag>

(see bioconductor-tomoda/tags for valid values for <tag>)

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