- recipe bioconductor-topconfects
Top Confident Effect Sizes
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/topconfects.html
- License
LGPL-2.1 | file LICENSE
- Recipe
Rank results by confident effect sizes, while maintaining False Discovery Rate and False Coverage-statement Rate control. Topconfects is an alternative presentation of TREAT results with improved usability, eliminating p-values and instead providing confidence bounds. The main application is differential gene expression analysis, providing genes ranked in order of confident log2 fold change, but it can be applied to any collection of effect sizes with associated standard errors.
- package bioconductor-topconfects¶
-
- Versions
1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-topconfects
and update with:
conda update bioconductor-topconfects
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-topconfects:<tag>
(see bioconductor-topconfects/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-topconfects/README.html)