recipe bioconductor-topgo

Enrichment Analysis for Gene Ontology







biotools: topgo, doi: 10.1093/bioinformatics/btl140

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

package bioconductor-topgo

(downloads) docker_bioconductor-topgo



depends bioconductor-annotationdbi:


depends bioconductor-biobase:


depends bioconductor-biocgenerics:


depends bioconductor-go.db:


depends bioconductor-graph:


depends r-base:


depends r-dbi:

depends r-lattice:

depends r-matrixstats:

depends r-sparsem:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-topgo

and update with::

   mamba update bioconductor-topgo

To create a new environment, run:

mamba create --name myenvname bioconductor-topgo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-topgo/tags`_ for valid values for ``<tag>``)

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