- recipe bioconductor-topgo
Enrichment Analysis for Gene Ontology
- Homepage:
- License:
LGPL
- Recipe:
- Links:
biotools: topgo, doi: 10.1093/bioinformatics/btl140
topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.
- package bioconductor-topgo¶
-
- Versions:
2.50.0-0
,2.46.0-0
,2.44.0-0
,2.42.0-1
,2.42.0-0
,2.41.0-0
,2.40.0-0
,2.37.0-0
,2.36.0-1
,2.50.0-0
,2.46.0-0
,2.44.0-0
,2.42.0-1
,2.42.0-0
,2.41.0-0
,2.40.0-0
,2.37.0-0
,2.36.0-1
,2.34.0-0
,2.32.0-0
,2.30.0-0
,2.28.0-0
,2.24.0-1
,2.22.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-go.db
>=3.16.0,<3.17.0
bioconductor-graph
>=1.76.0,<1.77.0
r-base
>=4.2,<4.3.0a0
r-sparsem
>=0.73
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-topgo
and update with:
conda update bioconductor-topgo
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-topgo:<tag>
(see bioconductor-topgo/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-topgo/README.html)