recipe bioconductor-tpp

Analyze thermal proteome profiling (TPP) experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TPP.html

License:

Artistic-2.0

Recipe:

/bioconductor-tpp/meta.yaml

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

package bioconductor-tpp

Versions:

3.26.0-0,  3.22.0-0,  3.20.0-0,  3.18.0-1,  3.18.0-0,  3.16.0-0,  3.14.0-0,  3.12.0-1,  3.10.1-0, 

3.26.0-0,  3.22.0-0,  3.20.0-0,  3.18.0-1,  3.18.0-0,  3.16.0-0,  3.14.0-0,  3.12.0-1,  3.10.1-0,  3.10.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biobroom >=1.30.0,<1.31.0

• bioconductor-limma >=3.54.0,<3.55.0

• r-base >=4.2,<4.3.0a0

• r-broom

• r-data.table

• r-doparallel

• r-dplyr

• r-foreach

• r-futile.logger

• r-ggplot2

• r-gridextra

• r-knitr

• r-magrittr

• r-mass

• r-mefa

• r-nls2

• r-openxlsx >=2.4.0

• r-plyr

• r-purrr

• r-rcolorbrewer

• r-rcurl

• r-reshape2

• r-rmarkdown

• r-stringr

• r-tibble

• r-tidyr

• r-venndiagram

• r-vgam

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tpp

and update with:

conda update bioconductor-tpp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tpp:<tag>

(see bioconductor-tpp/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tpp/README.html)