recipe bioconductor-tpp

Analyze thermal proteome profiling (TPP) experiments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/TPP.html

License

Artistic-2.0

Recipe

/bioconductor-tpp/meta.yaml

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

package bioconductor-tpp

Versions

3.16.0-0, 3.14.0-0, 3.12.0-1, 3.10.1-0, 3.10.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biobroom >=1.20.0,<1.21.0

• bioconductor-limma >=3.44.0,<3.45.0

• r-base >=4.0,<4.1.0a0

• r-broom

• r-data.table

• r-doparallel

• r-dplyr

• r-foreach

• r-futile.logger

• r-ggplot2

• r-gridextra

• r-knitr

• r-magrittr

• r-mass

• r-mefa

• r-nls2

• r-openxlsx >=2.4.0

• r-plyr

• r-purrr

• r-rcolorbrewer

• r-rcurl

• r-reshape2

• r-rmarkdown

• r-stringr

• r-tidyr

• r-venndiagram

• r-vgam

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tpp

and update with:

conda update bioconductor-tpp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tpp:<tag>

(see bioconductor-tpp/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tpp/README.html)