recipe bioconductor-tpp2d

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/TPP2D.html

License:

GPL-3

Recipe:

/bioconductor-tpp2d/meta.yaml

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.

package bioconductor-tpp2d

versions:

1.18.0-0,  1.16.0-0,  1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0, 

1.18.0-0,  1.16.0-0,  1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

depends bioconductor-biocparallel:

>=1.36.0,<1.37.0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends r-base:

>=4.3,<4.4.0a0

depends r-doparallel:

depends r-dplyr:

depends r-foreach:

depends r-ggplot2:

depends r-mass:

depends r-openxlsx:

depends r-rcurl:

depends r-stringr:

depends r-tidyr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tpp2d

and update with::

   mamba update bioconductor-tpp2d

To create a new environment, run:

mamba create --name myenvname bioconductor-tpp2d

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-tpp2d:<tag>

(see `bioconductor-tpp2d/tags`_ for valid values for ``<tag>``)

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