recipe bioconductor-transcriptogramer

Transcriptional analysis based on transcriptograms

Homepage

https://bioconductor.org/packages/3.10/bioc/html/transcriptogramer.html

License

GPL (>= 2)

Recipe

/bioconductor-transcriptogramer/meta.yaml

R package for transcriptional analysis based on transcriptograms, a method to analyze transcriptomes that projects expression values on a set of ordered proteins, arranged such that the probability that gene products participate in the same metabolic pathway exponentially decreases with the increase of the distance between two proteins of the ordering. Transcriptograms are, hence, genome wide gene expression profiles that provide a global view for the cellular metabolism, while indicating gene sets whose expression are altered.

package bioconductor-transcriptogramer

Versions

1.8.0-0, 1.6.0-1, 1.4.1-0

Depends

• bioconductor-biomart >=2.42.0,<2.43.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-reder >=1.34.0,<1.35.0

• bioconductor-topgo >=2.37.0,<2.38.0

• openjdk

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-dosnow

• r-foreach

• r-ggplot2

• r-igraph

• r-progress

• r-snow

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-transcriptogramer

and update with:

conda update bioconductor-transcriptogramer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-transcriptogramer:<tag>

(see bioconductor-transcriptogramer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-transcriptogramer/README.html)