-
recipe
bioconductor-transcriptogramer
Transcriptional analysis based on transcriptograms
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/transcriptogramer.html
- License
GPL (>= 2)
- Recipe
R package for transcriptional analysis based on transcriptograms, a method to analyze transcriptomes that projects expression values on a set of ordered proteins, arranged such that the probability that gene products participate in the same metabolic pathway exponentially decreases with the increase of the distance between two proteins of the ordering. Transcriptograms are, hence, genome wide gene expression profiles that provide a global view for the cellular metabolism, while indicating gene sets whose expression are altered.
-
package
bioconductor-transcriptogramer
¶ -
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.1-0
- Depends
bioconductor-biomart
>=2.46.0,<2.47.0
bioconductor-limma
>=3.46.0,<3.47.0
bioconductor-reder
>=1.38.0,<1.39.0
bioconductor-topgo
>=2.42.0,<2.43.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-transcriptogramer
and update with:
conda update bioconductor-transcriptogramer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-transcriptogramer:<tag>
(see bioconductor-transcriptogramer/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-transcriptogramer/README.html)