recipe bioconductor-transformgampoi

Variance Stabilizing Transformation for Gamma-Poisson Models

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/transformGamPoi.html

License:

GPL-3

Recipe:

/bioconductor-transformgampoi/meta.yaml

Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). This package provide two types of variance stabilizing transformations: (1) methods based on the delta method (e.g., 'acosh', 'log(x+1)'), (2) model residual based (Pearson and randomized quantile residuals).

package bioconductor-transformgampoi

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-glmgampoi >=1.10.0,<1.11.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-matrixgenerics >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-rcpp

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-transformgampoi

and update with:

conda update bioconductor-transformgampoi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-transformgampoi:<tag>

(see bioconductor-transformgampoi/tags for valid values for <tag>)

Download stats

Link to this page

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