recipe bioconductor-trio

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

Homepage

https://bioconductor.org/packages/3.11/bioc/html/trio.html

License

LGPL-2

Recipe

/bioconductor-trio/meta.yaml

Links

biotools: trio, doi: 10.1038/nmeth.3252

Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

package bioconductor-trio

(downloads) docker_bioconductor-trio

Versions

3.26.0-03.24.0-03.22.0-13.20.0-03.18.0-03.16.0-03.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trio

and update with:

conda update bioconductor-trio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trio:<tag>

(see bioconductor-trio/tags for valid values for <tag>)