recipe bioconductor-trio

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/trio.html

License:

LGPL-2

Recipe:

/bioconductor-trio/meta.yaml

Links:

biotools: trio, doi: 10.1038/nmeth.3252

Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

package bioconductor-trio

Versions:

3.36.0-0,  3.32.0-0,  3.30.0-0,  3.28.0-1,  3.28.0-0,  3.26.0-0,  3.24.0-0,  3.22.0-1,  3.20.0-0, 

3.36.0-0,  3.32.0-0,  3.30.0-0,  3.28.0-1,  3.28.0-0,  3.26.0-0,  3.24.0-0,  3.22.0-1,  3.20.0-0,  3.18.0-0,  3.16.0-0,  3.14.0-0

Depends:

• bioconductor-siggenes >=1.72.0,<1.73.0

• r-base >=4.2,<4.3.0a0

• r-logicreg >=1.6.1

• r-survival

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-trio

and update with:

conda update bioconductor-trio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trio:<tag>

(see bioconductor-trio/tags for valid values for <tag>)

Download stats

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