- recipe bioconductor-trio
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
- Homepage:
- License:
LGPL-2
- Recipe:
- Links:
biotools: trio, doi: 10.1038/nmeth.3252
Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.
- package bioconductor-trio¶
-
- Versions:
3.36.0-0
,3.32.0-0
,3.30.0-0
,3.28.0-1
,3.28.0-0
,3.26.0-0
,3.24.0-0
,3.22.0-1
,3.20.0-0
,3.36.0-0
,3.32.0-0
,3.30.0-0
,3.28.0-1
,3.28.0-0
,3.26.0-0
,3.24.0-0
,3.22.0-1
,3.20.0-0
,3.18.0-0
,3.16.0-0
,3.14.0-0
- Depends:
bioconductor-siggenes
>=1.72.0,<1.73.0
r-base
>=4.2,<4.3.0a0
r-logicreg
>=1.6.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-trio
and update with:
conda update bioconductor-trio
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-trio:<tag>
(see bioconductor-trio/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-trio/README.html)