bioconductor-trio

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Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

Home http://bioconductor.org/packages/3.6/bioc/html/trio.html
Versions 3.14.0, 3.16.0
License LGPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-trio

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trio

and update with:

conda update bioconductor-trio

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-trio.