recipe bioconductor-trio

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

Homepage

https://bioconductor.org/packages/3.12/bioc/html/trio.html

License

LGPL-2

Recipe

/bioconductor-trio/meta.yaml

Links

biotools: trio, doi: 10.1038/nmeth.3252

Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

package bioconductor-trio

Versions

3.28.0-0,  3.26.0-0,  3.24.0-0,  3.22.0-1,  3.20.0-0,  3.18.0-0,  3.16.0-0,  3.14.0-0

Depends

• bioconductor-siggenes >=1.64.0,<1.65.0

• r-base >=4.0,<4.1.0a0

• r-logicreg >=1.6.1

• r-survival

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trio

and update with:

conda update bioconductor-trio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trio:<tag>

(see bioconductor-trio/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-trio/README.html)