recipe bioconductor-tripr

T-cell Receptor/Immunoglobulin Profiler (TRIP)

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/tripr.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-tripr/meta.yaml

TRIP is a software framework that provides analytics services on antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell receptor, TR) gene sequence data. It is a web application written in R Shiny. It takes as input the output files of the IMGT/HighV-Quest tool. Users can select to analyze the data from each of the input samples separately, or the combined data files from all samples and visualize the results accordingly.

package bioconductor-tripr

versions:

1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.0.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-config:

>=0.3.1

depends r-data.table:

depends r-dplyr:

depends r-dt:

depends r-golem:

>=0.3.1

depends r-gridextra:

depends r-plot3d:

depends r-plotly:

depends r-plyr:

depends r-rcolorbrewer:

depends r-shiny:

>=1.6.0

depends r-shinybs:

depends r-shinyfiles:

depends r-shinyjs:

depends r-stringdist:

depends r-stringr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tripr

and update with::

   mamba update bioconductor-tripr

To create a new environment, run:

mamba create --name myenvname bioconductor-tripr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-tripr:<tag>

(see `bioconductor-tripr/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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