recipe bioconductor-trna

Analyzing tRNA sequences and structures

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/tRNA.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-trna/meta.yaml

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

package bioconductor-trna

Versions:

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.2-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-modstrings >=1.10.0,<1.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-structstrings >=1.10.0,<1.11.0

• bioconductor-xvector >=0.34.0,<0.35.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-scales

• r-stringr

Required By:

• bioconductor-trnadbimport

• bioconductor-trnascanimport

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-trna

and update with:

conda update bioconductor-trna

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trna:<tag>

(see bioconductor-trna/tags for valid values for <tag>)

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