recipe bioconductor-trna

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/tRNA.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-trna/meta.yaml

package bioconductor-trna

(downloads) docker_bioconductor-trna

Versions

1.0.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends r-assertive

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-scales

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trna

and update with:

conda update bioconductor-trna

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trna:<tag>

(see bioconductor-trna/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-trna/README.html)