recipe bioconductor-turbonorm

A fast scatterplot smoother suitable for microarray normalization

Homepage

https://bioconductor.org/packages/3.11/bioc/html/TurboNorm.html

License

LGPL

Recipe

/bioconductor-turbonorm/meta.yaml

Links

biotools: turbonorm

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

package bioconductor-turbonorm

Versions

1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-convert >=1.64.0,<1.65.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-marray >=1.66.0,<1.67.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

• r-lattice

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-turbonorm

and update with:

conda update bioconductor-turbonorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-turbonorm:<tag>

(see bioconductor-turbonorm/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-turbonorm/README.html)