recipe bioconductor-turbonorm

A fast scatterplot smoother suitable for microarray normalization

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TurboNorm.html

License:

LGPL

Recipe:

/bioconductor-turbonorm/meta.yaml

Links:

biotools: turbonorm

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

package bioconductor-turbonorm

Versions:

1.46.0-0,  1.42.0-2,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0, 

1.46.0-0,  1.42.0-2,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0

Depends:

• bioconductor-affy >=1.76.0,<1.77.0

• bioconductor-convert >=1.74.0,<1.75.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-marray >=1.76.0,<1.77.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-lattice

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-turbonorm

and update with:

conda update bioconductor-turbonorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-turbonorm:<tag>

(see bioconductor-turbonorm/tags for valid values for <tag>)

Download stats

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