recipe bioconductor-txdb.athaliana.biomart.plantsmart51

Annotation package for TxDb object(s)






Exposes an annotation databases generated from BioMart by exposing these as TxDb objects. This package is for Arabidopsis thaliana (taxID: 3702). The BioMart plantsmart release number is 51.

package bioconductor-txdb.athaliana.biomart.plantsmart51

(downloads) docker_bioconductor-txdb.athaliana.biomart.plantsmart51



depends bioconductor-annotationdbi:


depends bioconductor-data-packages:


depends bioconductor-genomicfeatures:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-txdb.athaliana.biomart.plantsmart51

and update with::

   mamba update bioconductor-txdb.athaliana.biomart.plantsmart51

To create a new environment, run:

mamba create --name myenvname bioconductor-txdb.athaliana.biomart.plantsmart51

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-txdb.athaliana.biomart.plantsmart51/tags`_ for valid values for ``<tag>``)

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