recipe bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene

Annotation package for TxDb object(s)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/TxDb.Rnorvegicus.UCSC.rn5.refGene.html

License:

Artistic-2.0

Recipe:

/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/meta.yaml

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

package bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene

Versions:

3.12.0-5,  3.12.0-4,  3.12.0-3,  3.12.0-2,  3.12.0-1,  3.12.0-0,  3.11.0-0,  3.10.0-0,  3.4.6-1, 

3.12.0-5,  3.12.0-4,  3.12.0-3,  3.12.0-2,  3.12.0-1,  3.12.0-0,  3.11.0-0,  3.10.0-0,  3.4.6-1,  3.4.4-0,  3.4.3-0,  3.4.2-1,  3.4.2-0,  3.4.1-0,  3.4.0-1

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-data-packages >=20221103

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-rattus.norvegicus

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene

and update with:

conda update bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene:<tag>

(see bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene/tags for valid values for <tag>)

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