recipe bioconductor-ucscrepeatmasker

UCSC RepeatMasker AnnotationHub resource metadata

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/UCSCRepeatMasker.html

License:

Artistic-2.0

Recipe:

/bioconductor-ucscrepeatmasker/meta.yaml

Store UCSC RepeatMasker AnnotationHub resource metadata. Provide provenance and citation information for UCSC RepeatMasker AnnotationHub resources. Illustrate in a vignette how to access those resources.

package bioconductor-ucscrepeatmasker

versions:

3.15.2-3,  3.15.2-2,  3.15.2-1,  3.15.2-0

depends bioconductor-annotationhub:

>=3.14.0,<3.15.0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-genomeinfodb:

>=1.42.0,<1.43.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-rcurl:

depends r-xml:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ucscrepeatmasker

and update with::

   mamba update bioconductor-ucscrepeatmasker

To create a new environment, run:

mamba create --name myenvname bioconductor-ucscrepeatmasker

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ucscrepeatmasker:<tag>

(see `bioconductor-ucscrepeatmasker/tags`_ for valid values for ``<tag>``)

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