recipe bioconductor-umi4cats

UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/UMI4Cats.html

License

Artistic-2.0

Recipe

/bioconductor-umi4cats/meta.yaml

UMI-4C is a technique that allows characterization of 3D chromatin interactions with a bait of interest, taking advantage of a sonication step to produce unique molecular identifiers (UMIs) that help remove duplication bias, thus allowing a better differential comparsion of chromatin interactions between conditions. This package allows processing of UMI-4C data, starting from FastQ files provided by the sequencing facility. It provides two statistical methods for detecting differential contacts and includes a visualization function to plot integrated information from a UMI-4C assay.

package bioconductor-umi4cats

(downloads) docker_bioconductor-umi4cats

Versions

1.2.0-01.0.1-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-umi4cats

and update with:

conda update bioconductor-umi4cats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-umi4cats:<tag>

(see bioconductor-umi4cats/tags for valid values for <tag>)