recipe bioconductor-uniprotkeywords

Keywords from UniProt Database

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/UniProtKeywords.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-uniprotkeywords/meta.yaml

UniProt database provides a list of controlled vocabulary represented as keywords for genes or proteins. This is useful for summarizing gene functions in a compact way. This package provides data of keywords hierarchy and gene-keyword relations.

package bioconductor-uniprotkeywords

versions:

0.99.7-0,  0.99.4-1,  0.99.4-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-uniprotkeywords

and update with::

   mamba update bioconductor-uniprotkeywords

To create a new environment, run:

mamba create --name myenvname bioconductor-uniprotkeywords

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-uniprotkeywords:<tag>

(see `bioconductor-uniprotkeywords/tags`_ for valid values for ``<tag>``)

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