recipe bioconductor-updateobject

Find/fix old serialized S4 instances

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/updateObject.html

License:

Artistic-2.0

Recipe:

/bioconductor-updateobject/meta.yaml

A set of tools built around updateObject() to work with old serialized S4 instances. The package is primarily useful to package maintainers who want to update the serialized S4 instances included in their package. This is still work-in-progress.

package bioconductor-updateobject

versions:

1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends r-base:

>=4.3,<4.4.0a0

depends r-digest:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-updateobject

and update with::

   mamba update bioconductor-updateobject

To create a new environment, run:

mamba create --name myenvname bioconductor-updateobject

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-updateobject:<tag>

(see `bioconductor-updateobject/tags`_ for valid values for ``<tag>``)

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Link to this page

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