- recipe bioconductor-vanillaice
A Hidden Markov Model for high throughput genotyping arrays
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/VanillaICE.html
- License:
LGPL-2
- Recipe:
- Links:
biotools: vanillaice
Hidden Markov Models for characterizing chromosomal alteration in high throughput SNP arrays.
- package bioconductor-vanillaice¶
-
- Versions:
1.60.0-0
,1.56.3-1
,1.56.3-0
,1.56.0-0
,1.54.0-0
,1.52.0-2
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.60.0-0
,1.56.3-1
,1.56.3-0
,1.56.0-0
,1.54.0-0
,1.52.0-2
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-0
,1.46.0-1
,1.44.0-0
,1.42.4-0
,1.40.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-bsgenome.hsapiens.ucsc.hg18
>=1.3.0,<1.4.0
bioconductor-crlmm
>=1.56.0,<1.57.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-oligoclasses
>=1.60.0,<1.61.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-vanillaice
and update with:
conda update bioconductor-vanillaice
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-vanillaice:<tag>
(see bioconductor-vanillaice/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-vanillaice/README.html)