recipe bioconductor-vanillaice

A Hidden Markov Model for high throughput genotyping arrays

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/VanillaICE.html

License:

LGPL-2

Recipe:

/bioconductor-vanillaice/meta.yaml

Links:

biotools: vanillaice

Hidden Markov Models for characterizing chromosomal alteration in high throughput SNP arrays.

package bioconductor-vanillaice

Versions:

1.60.0-0,  1.56.3-1,  1.56.3-0,  1.56.0-0,  1.54.0-0,  1.52.0-2,  1.52.0-1,  1.52.0-0,  1.50.0-0, 

1.60.0-0,  1.56.3-1,  1.56.3-0,  1.56.0-0,  1.54.0-0,  1.52.0-2,  1.52.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-1,  1.44.0-0,  1.42.4-0,  1.40.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-bsgenome.hsapiens.ucsc.hg18 >=1.3.0,<1.4.0

• bioconductor-crlmm >=1.56.0,<1.57.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-matrixgenerics >=1.10.0,<1.11.0

• bioconductor-oligoclasses >=1.60.0,<1.61.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-foreach

• r-lattice

• r-matrixstats

Required By:

• bioconductor-minimumdistance

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-vanillaice

and update with:

conda update bioconductor-vanillaice

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vanillaice:<tag>

(see bioconductor-vanillaice/tags for valid values for <tag>)

Download stats

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