recipe bioconductor-variantexperiment

A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend

Homepage

https://bioconductor.org/packages/3.10/bioc/html/VariantExperiment.html

License

GPL-3

Recipe

/bioconductor-variantexperiment/meta.yaml

VariantExperiment is a Bioconductor package for saving data in VCF/GDS format into RangedSummarizedExperiment object. The high-throughput genetic/genomic data are saved in GDSArray objects. The annotation data for features/samples are saved in DelayedDataFrame format with mono-dimensional GDSArray in each column. The on-disk representation of both assay data and annotation data achieves on-disk reading and processing and saves memory space significantly. The interface of RangedSummarizedExperiment data format enables easy and common manipulations for high-throughput genetic/genomic data with common SummarizedExperiment metaphor in R and Bioconductor.

package bioconductor-variantexperiment

(downloads) docker_bioconductor-variantexperiment

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-variantexperiment

and update with:

conda update bioconductor-variantexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-variantexperiment:<tag>

(see bioconductor-variantexperiment/tags for valid values for <tag>)