recipe bioconductor-varianttools

Explore, diagnose, and compare variant calls using filters.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/VariantTools.html

License

Artistic-2.0

Recipe

/bioconductor-varianttools/meta.yaml

Links

biotools: varianttools, doi: 10.1101/027227

package bioconductor-varianttools

Versions

1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.1-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biocparallel >=1.16.0,<1.17.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-bsgenome >=1.50.0,<1.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-rtracklayer >=1.42.0,<1.43.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-variantannotation >=1.28.0,<1.29.0

• r-base >=3.5.1,<3.5.2.0a0

• r-matrix

Required By

• bioconductor-htseqgenie

• bioconductor-mtseeker

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-varianttools

and update with:

conda update bioconductor-varianttools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-varianttools:<tag>

(see bioconductor-varianttools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-varianttools/README.html)