recipe bioconductor-varianttools

Tools for Exploratory Analysis of Variant Calls

Homepage

https://bioconductor.org/packages/3.13/bioc/html/VariantTools.html

License

Artistic-2.0

Recipe

/bioconductor-varianttools/meta.yaml

Links

biotools: varianttools, doi: 10.1101/027227

Explore, diagnose, and compare variant calls using filters.

package bioconductor-varianttools

Versions

1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0, 

1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.1-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biocparallel >=1.26.0,<1.27.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-bsgenome >=1.60.0,<1.61.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-rtracklayer >=1.52.0,<1.53.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-variantannotation >=1.38.0,<1.39.0

• r-base >=4.1,<4.2.0a0

• r-matrix

Required By

• bioconductor-mmappr2

• bioconductor-htseqgenie

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-varianttools

and update with:

conda update bioconductor-varianttools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-varianttools:<tag>

(see bioconductor-varianttools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-varianttools/README.html)