- recipe bioconductor-varianttools
Tools for Exploratory Analysis of Variant Calls
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/VariantTools.html
- License
Artistic-2.0
- Recipe
- Links
biotools: varianttools, doi: 10.1101/027227
Explore, diagnose, and compare variant calls using filters.
- package bioconductor-varianttools¶
-
- Versions
1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.1-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-varianttools
and update with:
conda update bioconductor-varianttools
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-varianttools:<tag>
(see bioconductor-varianttools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-varianttools/README.html)