recipe bioconductor-varianttoolsdata

Data for the VariantTools tutorial

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/VariantToolsData.html

License:

Artistic-2.0

Recipe:

/bioconductor-varianttoolsdata/meta.yaml

Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.

package bioconductor-varianttoolsdata

Versions:

1.22.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1, 

1.22.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-data-packages >=20221108

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-varianttoolsdata

and update with:

conda update bioconductor-varianttoolsdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-varianttoolsdata:<tag>

(see bioconductor-varianttoolsdata/tags for valid values for <tag>)

Download stats

Link to this page

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