recipe bioconductor-varianttoolsdata

Data for the VariantTools tutorial

Homepage:

https://bioconductor.org/packages/3.17/data/experiment/html/VariantToolsData.html

License:

Artistic-2.0

Recipe:

/bioconductor-varianttoolsdata/meta.yaml

Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.

package bioconductor-varianttoolsdata

(downloads) docker_bioconductor-varianttoolsdata

versions:
1.24.0-0,  1.22.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0, 

1.24.0-0,  1.22.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

depends bioconductor-biocgenerics:

>=0.46.0,<0.47.0

depends bioconductor-data-packages:

>=20230706

depends bioconductor-genomicranges:

>=1.52.0,<1.53.0

depends bioconductor-variantannotation:

>=1.46.0,<1.47.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-varianttoolsdata

and update with::

   mamba update bioconductor-varianttoolsdata

To create a new environment, run:

mamba create --name myenvname bioconductor-varianttoolsdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-varianttoolsdata:<tag>

(see `bioconductor-varianttoolsdata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-varianttoolsdata/README.html)