recipe bioconductor-vasp

Quantification and Visualization of Variations of Splicing in Population

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/VaSP.html

License:

GPL (>= 2.0)

Recipe:

/bioconductor-vasp/meta.yaml

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population. (Warning: The visualizing function is removed due to the dependent package Sushi deprecated. If you want to use it, please change back to an older version.)

package bioconductor-vasp

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.4-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-ballgown >=2.30.0,<2.31.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-matrixstats

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-vasp

and update with:

conda update bioconductor-vasp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vasp:<tag>

(see bioconductor-vasp/tags for valid values for <tag>)

Download stats

Link to this page

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