recipe bioconductor-vcfarray

Representing on-disk / remote VCF files as array-like objects

Homepage

https://bioconductor.org/packages/3.10/bioc/html/VCFArray.html

License

GPL-3

Recipe

/bioconductor-vcfarray/meta.yaml

VCFArray extends the DelayedArray to represent VCF data entries as array-like objects with on-disk / remote VCF file as backend. Data entries from VCF files, including info fields, FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray instances with different dimensions.

package bioconductor-vcfarray

(downloads) docker_bioconductor-vcfarray

Versions

1.2.0-0, 1.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-vcfarray

and update with:

conda update bioconductor-vcfarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vcfarray:<tag>

(see bioconductor-vcfarray/tags for valid values for <tag>)