recipe bioconductor-vcfarray

Representing on-disk / remote VCF files as array-like objects

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/VCFArray.html

License:

GPL-3

Recipe:

/bioconductor-vcfarray/meta.yaml

VCFArray extends the DelayedArray to represent VCF data entries as array-like objects with on-disk / remote VCF file as backend. Data entries from VCF files, including info fields, FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray instances with different dimensions.

package bioconductor-vcfarray

Versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.3-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-genomicfiles >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-vcfarray

and update with:

conda update bioconductor-vcfarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vcfarray:<tag>

(see bioconductor-vcfarray/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-vcfarray/README.html)