- recipe bioconductor-vcfarray
Representing on-disk / remote VCF files as array-like objects
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/VCFArray.html
- License:
GPL-3
- Recipe:
VCFArray extends the DelayedArray to represent VCF data entries as array-like objects with on-disk / remote VCF file as backend. Data entries from VCF files, including info fields, FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray instances with different dimensions.
- package bioconductor-vcfarray¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.3-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-genomicfiles
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-vcfarray
and update with:
conda update bioconductor-vcfarray
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-vcfarray:<tag>
(see bioconductor-vcfarray/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-vcfarray/README.html)