recipe bioconductor-vectrapolarisdata

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/VectraPolarisData.html

License:

Artistic-2.0

Recipe:

/bioconductor-vectrapolarisdata/meta.yaml

Provides two multiplex imaging datasets collected on Vectra instruments at the University of Colorado Anschutz Medical Campus. Data are provided as a Spatial Experiment objects. Data is provided in tabular form and has been segmented and phenotyped using Inform software. Raw .tiff files are not included.

package bioconductor-vectrapolarisdata

(downloads) docker_bioconductor-vectrapolarisdata

versions:

1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends bioconductor-spatialexperiment:

>=1.12.0,<1.13.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-vectrapolarisdata

and update with::

   mamba update bioconductor-vectrapolarisdata

To create a new environment, run:

mamba create --name myenvname bioconductor-vectrapolarisdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-vectrapolarisdata:<tag>

(see `bioconductor-vectrapolarisdata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-vectrapolarisdata/README.html)