recipe bioconductor-velociraptor

Toolkit for Single-Cell Velocity

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/velociraptor.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-velociraptor/meta.yaml

This package provides Bioconductor-friendly wrappers for RNA velocity calculations in single-cell RNA-seq data. We use the basilisk package to manage Conda environments, and the zellkonverter package to convert data structures between SingleCellExperiment (R) and AnnData (Python). The information produced by the velocity methods is stored in the various components of the SingleCellExperiment class.

package bioconductor-velociraptor

(downloads) docker_bioconductor-velociraptor

Versions:

1.8.0-01.4.0-01.2.0-01.0.0-11.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-velociraptor

and update with:

conda update bioconductor-velociraptor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-velociraptor:<tag>

(see bioconductor-velociraptor/tags for valid values for <tag>)

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