recipe bioconductor-wes.1kg.wugsc

Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC).

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/WES.1KG.WUGSC.html

License:

GPL-2

Recipe:

/bioconductor-wes.1kg.wugsc/meta.yaml

The assembled .bam files of whole exome sequencing data from the 1000 Genomes Project. 46 samples sequenced by the Washington University Genome Sequencing Center are included.

package bioconductor-wes.1kg.wugsc

(downloads) docker_bioconductor-wes.1kg.wugsc

versions:
1.34.0-0,  1.32.0-0,  1.29.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.21.0-0, 

1.34.0-0,  1.32.0-0,  1.29.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.21.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-wes.1kg.wugsc

and update with::

   mamba update bioconductor-wes.1kg.wugsc

To create a new environment, run:

mamba create --name myenvname bioconductor-wes.1kg.wugsc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-wes.1kg.wugsc:<tag>

(see `bioconductor-wes.1kg.wugsc/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-wes.1kg.wugsc/README.html)