recipe bioconductor-xcms

Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/xcms.html

License

GPL (>= 2) + file LICENSE

Recipe

/bioconductor-xcms/meta.yaml

package bioconductor-xcms

(downloads) docker_bioconductor-xcms

Versions

3.4.4-0, 3.4.2-0, 3.4.1-0, 3.0.0-1, 3.0.0-0, 1.52.0-1, 1.52.0-0, 1.50.1-0, 1.48.0-1, 1.46.0-1, 1.46.0-0, 1.44.0-1, 1.44.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-massspecwavelet

>=1.48.0,<1.49.0

Depends bioconductor-msnbase

>=2.8.0,<2.9.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends bioconductor-mzr

>=2.16.0,<2.17.0

Depends bioconductor-protgenerics

>=1.14.0,<1.15.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-lattice

Depends r-plyr

Depends r-rann

Depends r-rcolorbrewer

Depends r-robustbase

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-xcms

and update with:

conda update bioconductor-xcms

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xcms:<tag>

(see bioconductor-xcms/tags for valid values for <tag>)