recipe bioconductor-xcms

LC-MS and GC-MS Data Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/xcms.html

License:

GPL (>= 2) + file LICENSE

Recipe:

/bioconductor-xcms/meta.yaml

Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.

package bioconductor-xcms

Versions:

3.20.0-0,  3.16.1-1,  3.16.1-0,  3.16.0-0,  3.14.0-0,  3.12.0-1,  3.12.0-0,  3.10.0-0,  3.8.0-0, 

3.20.0-0,  3.16.1-1,  3.16.1-0,  3.16.0-0,  3.14.0-0,  3.12.0-1,  3.12.0-0,  3.10.0-0,  3.8.0-0,  3.6.1-0,  3.4.4-0,  3.4.2-0,  3.4.1-0,  3.0.0-1,  3.0.0-0,  1.52.0-1,  1.52.0-0,  1.50.1-0,  1.48.0-1,  1.46.0-1,  1.46.0-0,  1.44.0-1,  1.44.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-massspecwavelet >=1.64.0,<1.65.0

• bioconductor-mscoreutils >=1.10.0,<1.11.0

• bioconductor-msfeatures >=1.6.0,<1.7.0

• bioconductor-msnbase >=2.24.0,<2.25.0

• bioconductor-mzr >=2.32.0,<2.33.0

• bioconductor-protgenerics >=1.30.0,<1.31.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-lattice

• r-plyr

• r-rann

• r-rcolorbrewer

• r-robustbase

Required By:

• bioconductor-risa

• bioconductor-ncgtw

• bioconductor-pth2o2lipids

• r-metaboanalyst

• bioconductor-lobstahs

• bioconductor-faahko

• bioconductor-mait

• bioconductor-profia

• bioconductor-mobilitytransformr

• bioconductor-flagme

• bioconductor-cosmiq

• r-george

• bioconductor-cliquems

• bioconductor-camera

• bioconductor-ipo

• bioconductor-metab

• bioconductor-metams

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-xcms

and update with:

conda update bioconductor-xcms

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xcms:<tag>

(see bioconductor-xcms/tags for valid values for <tag>)

Download stats

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