- recipe bioconductor-xcms
LC-MS and GC-MS Data Analysis
- Homepage:
- License:
GPL (>= 2) + file LICENSE
- Recipe:
Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.
- package bioconductor-xcms¶
-
- Versions:
3.20.0-0
,3.16.1-1
,3.16.1-0
,3.16.0-0
,3.14.0-0
,3.12.0-1
,3.12.0-0
,3.10.0-0
,3.8.0-0
,3.20.0-0
,3.16.1-1
,3.16.1-0
,3.16.0-0
,3.14.0-0
,3.12.0-1
,3.12.0-0
,3.10.0-0
,3.8.0-0
,3.6.1-0
,3.4.4-0
,3.4.2-0
,3.4.1-0
,3.0.0-1
,3.0.0-0
,1.52.0-1
,1.52.0-0
,1.50.1-0
,1.48.0-1
,1.46.0-1
,1.46.0-0
,1.44.0-1
,1.44.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-massspecwavelet
>=1.64.0,<1.65.0
bioconductor-mscoreutils
>=1.10.0,<1.11.0
bioconductor-msfeatures
>=1.6.0,<1.7.0
bioconductor-msnbase
>=2.24.0,<2.25.0
bioconductor-mzr
>=2.32.0,<2.33.0
bioconductor-protgenerics
>=1.30.0,<1.31.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-xcms
and update with:
conda update bioconductor-xcms
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-xcms:<tag>
(see bioconductor-xcms/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-xcms/README.html)