- recipe bioconductor-xeva
Analysis of patient-derived xenograft (PDX) data
The Xeva package provides efficient and powerful functions for patient-drived xenograft (PDX) based pharmacogenomic data analysis. This package contains a set of functions to perform analysis of patient-derived xenograft data. This package was developed by the BHKLab, for further information please see our documentation.
- package bioconductor-xeva¶
- depends bioconductor-biobase:
- depends bioconductor-complexheatmap:
- depends bioconductor-pharmacogx:
- depends r-base:
- depends r-bbmisc:
- depends r-doparallel:
- depends r-downloader:
- depends r-ggplot2:
- depends r-nlme:
- depends r-rmisc:
- depends r-scales:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-xeva and update with:: mamba update bioconductor-xeva
To create a new environment, run:
mamba create --name myenvname bioconductor-xeva
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-xeva:<tag> (see `bioconductor-xeva/tags`_ for valid values for ``<tag>``)