recipe bioconductor-xmapbridge

Export plotting files to the xmapBridge for visualisation in X:Map

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/xmapbridge.html

License:

LGPL-3

Recipe:

/bioconductor-xmapbridge/meta.yaml

Links:

biotools: xmapbridge

xmapBridge can plot graphs in the X:Map genome browser. This package exports plotting files in a suitable format.

package bioconductor-xmapbridge

versions:

1.60.0-0,  1.58.0-0,  1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0, 

1.60.0-0,  1.58.0-0,  1.56.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-xmapbridge

and update with::

   mamba update bioconductor-xmapbridge

To create a new environment, run:

mamba create --name myenvname bioconductor-xmapbridge

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-xmapbridge:<tag>

(see `bioconductor-xmapbridge/tags`_ for valid values for ``<tag>``)

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