recipe bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.html

License:

Artistic-2.0

Recipe:

/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/meta.yaml

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

package bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38

Versions:

0.99.12-11,  0.99.12-10,  0.99.12-9,  0.99.12-8,  0.99.12-7,  0.99.12-6,  0.99.12-5,  0.99.12-4,  0.99.12-3, 

0.99.12-11,  0.99.12-10,  0.99.12-9,  0.99.12-8,  0.99.12-7,  0.99.12-6,  0.99.12-5,  0.99.12-4,  0.99.12-3,  0.99.12-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221103

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38

and update with:

conda update bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38:<tag>

(see bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch38/tags for valid values for <tag>)

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