recipe bioconductor-yamss

Tools for high-throughput metabolomics

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/yamss.html

License:

Artistic-2.0

Recipe:

/bioconductor-yamss/meta.yaml

Links:

biotools: yamss

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. At the core of these methods is a peak detection phase that pools information across all samples simultaneously. This is in contrast to other methods that detect peaks in a sample-by-sample basis.

package bioconductor-yamss

versions:

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0, 

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.1-0,  1.4.0-0

depends bioconductor-biocgenerics:

>=0.52.0,<0.53.0

depends bioconductor-ebimage:

>=4.48.0,<4.49.0

depends bioconductor-iranges:

>=2.40.0,<2.41.0

depends bioconductor-limma:

>=3.62.0,<3.63.0

depends bioconductor-mzr:

>=2.40.0,<2.41.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends bioconductor-summarizedexperiment:

>=1.36.0,<1.37.0

depends r-base:

>=4.4,<4.5.0a0

depends r-data.table:

depends r-matrix:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-yamss

and update with::

   mamba update bioconductor-yamss

To create a new environment, run:

mamba create --name myenvname bioconductor-yamss

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-yamss:<tag>

(see `bioconductor-yamss/tags`_ for valid values for ``<tag>``)

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