recipe bioexcel_seqqc

Sequence Quality Control pipeline/modules

Homepage:

https://github.com/bioexcel/bioexcel_seqqc

License:

APACHE / Apache Software License

Recipe:

/bioexcel_seqqc/meta.yaml

package bioexcel_seqqc

versions:

0.6-0,  0.5-0

depends cutadapt:

depends fastqc:

depends python:

>=3

depends pyyaml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioexcel_seqqc

and update with::

   mamba update bioexcel_seqqc

To create a new environment, run:

mamba create --name myenvname bioexcel_seqqc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioexcel_seqqc:<tag>

(see `bioexcel_seqqc/tags`_ for valid values for ``<tag>``)

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Link to this page

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