recipe bioframe

Pandas utilities for tab-delimited and other genomic files

Homepage:

https://github.com/mirnylab/bioframe

Documentation:

https://bioframe.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/bioframe/meta.yaml

package bioframe

versions:

0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.1-0, 

0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.1-0,  0.4.0-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.2.0-0,  0.1.0-0,  0.0.12-0

depends cytoolz:

depends matplotlib-base:

depends numpy:

>=1.10

depends pairix:

depends pandas:

>=1.3

depends pyfaidx:

depends pysam:

depends python:

>=3.7

depends pyyaml:

depends requests:

depends six:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioframe

and update with::

   mamba update bioframe

To create a new environment, run:

mamba create --name myenvname bioframe

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioframe:<tag>

(see `bioframe/tags`_ for valid values for ``<tag>``)

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