recipe biokit

Set of visualisation and analysis tools for biological data sets

Homepage:

http://pypi.python.org/pypi/biokit

License:

BSD

Recipe:

/biokit/meta.yaml

package biokit

versions:

0.5.0-0,  0.4.6-1,  0.4.6-0,  0.4.4-1,  0.4.4-0,  0.4.2-1,  0.4.2-0,  0.4.1-4,  0.4.1-2, 

0.5.0-0,  0.4.6-1,  0.4.6-0,  0.4.4-1,  0.4.4-0,  0.4.2-1,  0.4.2-0,  0.4.1-4,  0.4.1-2,  0.4.1-0,  0.2.1-0,  0.1.4-0,  0.1.3-0

depends biopython:

depends bioservices:

>=1.4.16

depends colorlog:

depends colormap:

depends easydev:

>=0.9.34

depends matplotlib-base:

depends mesalib:

depends numpydoc:

depends pandas:

depends python:

depends pyyaml:

depends scipy:

depends xmltodict:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biokit

and update with::

   mamba update biokit

To create a new environment, run:

mamba create --name myenvname biokit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biokit:<tag>

(see `biokit/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/biokit/README.html)