recipe biolite

A lightweight bioinformatics framework with automated tracking of diagnostics and provenance.

Homepage:

https://bitbucket.org/caseywdunn/biolite

License:

GPLv3

Recipe:

/biolite/meta.yaml

package biolite

versions:

1.2.0-0,  1.1.0-2,  1.1.0-0

depends biolite-tools:

0.4.0

depends biopython:

1.68

depends dendropy:

4.2.0

depends docutils:

0.13.1

depends ete3:

3.0.0b35

depends lxml:

3.7.2

depends matplotlib:

2.0.0

depends networkx:

1.11

depends numpy:

1.11.3

depends pandas:

0.19.2

depends python:

>=2.7,<2.8.0a0

depends python-wget:

3.2

depends setuptools:

depends sra-tools:

2.8.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biolite

and update with::

   mamba update biolite

To create a new environment, run:

mamba create --name myenvname biolite

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biolite:<tag>

(see `biolite/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/biolite/README.html)