recipe biolite

A lightweight bioinformatics framework with automated tracking of diagnostics and provenance.

Homepage

https://bitbucket.org/caseywdunn/biolite

License

GPLv3

Recipe

/biolite/meta.yaml

package biolite

Versions

1.2.0-0, 1.1.0-2, 1.1.0-0

Depends

• biolite-tools 0.4.0

• biopython 1.68

• dendropy 4.2.0

• docutils 0.13.1

• ete3 3.0.0b35

• lxml 3.7.2

• matplotlib 2.0.0

• networkx 1.11

• numpy 1.11.3

• pandas 0.19.2

• python >=2.7,<2.8.0a0

• python-wget 3.2

• setuptools

• sra-tools 2.8.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install biolite

and update with:

conda update biolite

or use the docker container:

docker pull quay.io/biocontainers/biolite:<tag>

(see biolite/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/biolite/README.html)