recipe biomaj

Automates the update cycle and the supervision of the locally mirrored databank repository

Homepage:

http://biomaj.genouest.org

License:

AGPL / GNU Affero General Public License v3 or later (AGPLv3+)

Recipe:

/biomaj/meta.yaml

Links:

biotools: biomaj, doi: 10.1093/bioinformatics/btn325

package biomaj

versions:

3.0.19-0

depends bcrypt:

depends drmaa:

depends elasticsearch:

depends future:

depends ldap3:

depends pycurl:

depends pymongo:

depends python:

2.7*

depends tabulate:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biomaj

and update with::

   mamba update biomaj

To create a new environment, run:

mamba create --name myenvname biomaj

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biomaj:<tag>

(see `biomaj/tags`_ for valid values for ``<tag>``)

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Link to this page

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