recipe bionetcomp

BioNetComp: A Python package for biological network comparison from STRING database.

Homepage:

https://github.com/lmigueel/bionetcomp/

License:

LGPL / GNU General Public (GPL)

Recipe:

/bionetcomp/meta.yaml

package bionetcomp

versions:

1.1-0

depends gseapy:

depends matplotlib-base:

depends networkx:

>=2.5

depends numpy:

depends pandas:

depends python:

depends requests:

depends scipy:

>=1.6.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bionetcomp

and update with::

   mamba update bionetcomp

To create a new environment, run:

mamba create --name myenvname bionetcomp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bionetcomp:<tag>

(see `bionetcomp/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bionetcomp/README.html)