recipe biopet-scatterregions

This tool breaks a reference or bed file into smaller scatter regions of equal size.

Homepage

https://github.com/biopet/scatterregions

License

MIT

Recipe

/biopet-scatterregions/meta.yaml

This tool breaks a reference or bed file into smaller scatter regions of equal size. This can be used for processing inside a pipeline.

For documentation and manuals visit our github.io page: https://biopet.github.io/scatterregions

package biopet-scatterregions

(downloads) docker_biopet-scatterregions

Versions

0.2-00.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install biopet-scatterregions

and update with:

conda update biopet-scatterregions

or use the docker container:

docker pull quay.io/biocontainers/biopet-scatterregions:<tag>

(see biopet-scatterregions/tags for valid values for <tag>)

Notes

biopet-scatterregions is a Java program that comes with a custom wrapper shell script. By default 'no default java option' is set in the wrapper. The command that runs the program is 'biopet-scatterregions'. If you want to overwrite it you can specify memory options directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with 'biopet-scatterregions -Xms512m -Xmx1g'.