recipe biophi

BioPhi open-source antibody design platform.

Homepage:

https://github.com/Merck/BioPhi

Documentation:

https://biophi.dichlab.org

License:

MIT / MIT

Recipe:

/biophi/meta.yaml

Links:

biotools: biophi

package biophi

versions:

1.0.10-0,  1.0.9-4,  1.0.9-3,  1.0.9-2,  1.0.9-1,  1.0.9-0,  1.0.8-1,  1.0.8-0,  1.0.7-0, 

1.0.10-0,  1.0.9-4,  1.0.9-3,  1.0.9-2,  1.0.9-1,  1.0.9-0,  1.0.8-1,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-1,  1.0.4-0,  1.0.3-0,  1.0.1-0

depends abnumber:

0.3.2

depends anarci:

2020.04.23

depends celery:

depends click:

>=7

depends flask:

<3

depends hmmer:

>=3.1

depends humanize:

depends pandas:

<2.2

depends python:

>=3.8

depends redis-py:

depends requests:

depends sapiens:

>=1.0.4

depends sqlalchemy:

<2

depends tqdm:

depends werkzeug:

<3

depends xlsxwriter:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biophi

and update with::

   mamba update biophi

To create a new environment, run:

mamba create --name myenvname biophi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biophi:<tag>

(see `biophi/tags`_ for valid values for ``<tag>``)

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