recipe bioprov

BioProv - Provenance capture for bioinformatics workflows

Homepage:

https://github.com/vinisalazar/BioProv

Documentation:

https://bioprov.readthedocs.io/

Developer docs:

https://github.com/vinisalazar/bioprov

License:

MIT / MIT

Recipe:

/bioprov/meta.yaml

package bioprov

versions:

0.1.23-0,  0.1.22-0,  0.1.20-0

depends biopython:

depends coolname:

depends coveralls:

depends dataclasses:

depends pandas:

depends prodigal:

depends prov:

depends provstore-api:

depends pydot:

depends pytest:

depends pytest-cov:

depends python:

depends tinydb:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioprov

and update with::

   mamba update bioprov

To create a new environment, run:

mamba create --name myenvname bioprov

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioprov:<tag>

(see `bioprov/tags`_ for valid values for ``<tag>``)

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Link to this page

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